PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g21480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 463aa    MW: 51072.6 Da    PI: 4.2163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g21480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-163283146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                     +g+WT+ Ed +lvd+v+ +G g+W+++ +++        gRt++++k++w++
  Vradi05g21480.1 32 KGPWTAAEDVILVDYVNTHGEGNWNAVQKMIDffcfqlPGRTDNEIKNYWNT 83
                     79************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4772789IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-183088IPR009057Homeodomain-like
SuperFamilySSF466893.8E-143090IPR009057Homeodomain-like
SMARTSM007171.2E-133187IPR001005SANT/Myb domain
PfamPF002499.5E-143283IPR001005SANT/Myb domain
CDDcd001675.51E-123483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MTHEIDDNVH GENQTGSRLN GGGIGGGTVL KKGPWTAAED VILVDYVNTH GEGNWNAVQK  60
MIDFFCFQLP GRTDNEIKNY WNTRMKRRQR AGLPLYPPEV VLQGFQDNKH DQGTAEISDG  120
DGGHQDFMEK SNYEMHDAIY DSLKENQGIL PFVPQLPDIS ANSILPNVLG SPSYCNFLPS  180
TLPNHDHLQE SSVSFVGSNE LNSNGFYPFD NFKDNTSDRI AESFGLHSPL DHGASSYGSI  240
CYSHSVSNDN YSTSKLASEA VKSELPSLQY PETEFGSWGT STPPPLNDST DVFIHSPQPP  300
YALDSGSSSS LSRFLNEFLY QQAKTLGYSN NNWPESSNSS IATPVDGAES SALNMYETEW  360
EDYADPVSPF GATSILNEHP VVGTNGKPWD GWEPFQTFSG NNVKLQSVDQ VSAPKIENQS  420
MSMLNLTWPD VLLASDWHEL YSENNSMNQA DMIDASDNFT RQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498875.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498876.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498878.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498879.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498880.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A0L9UKH70.0A0A0L9UKH7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SIX90.0A0A0S3SIX9_PHAAN; Uncharacterized protein
STRINGGLYMA04G15150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.33e-54myb domain protein 33